The present work demonstrates a detailed characterization of the interaction of a potential chloride channel blocker, 9-methyl anthroate (9-MA), with a model transport protein, Bovine Serum Albumin (BSA). The modulated photophysical properties of the emissive drug molecule within the microheterogeneous bio-environment of the protein have been exploited spectroscopically to monitor the probe-protein binding interaction. Apart from evaluating the binding constant, the probable location of the neutral molecule within the protein cavity (subdomain IB) is explored by an AutoDock-based blind docking simulation. The absence of the Red-Edge Effect has been corroborated by the enhanced lifetime of the probe, being substantially greater than the solvent reorientation time. A dip-And-rise characteristic of the rotational relaxation profile of the drug within the protein has been argued to originate from a significant difference in the lifetime as well as amplitude of the free and protein-bound drug molecule. Unfolding of the protein in the presence of the drug molecule has been probed by the decrease of the α-helical content, obtained via circular dichroism (CD) spectroscopy, which is also supported by the gradual loss of the esterase activity of the protein in the presence of the drug molecule. © 2014 the Owner Societies.

NIKHIL GUCHHAIT

Chemistry

A GANGULY

B K PAUL

S GHOSH

S DALAPATI

University of Calcutta (informally known as Calcutta University or CU) is a collegiate public state university located in Kolkata, West Bengal, India.&nbsp;Within India it is recognized as a &quot;Five-Star University&quot; and accredited &quot;A&quot; Grade by National Assessment and Accreditation Council.

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The University of Calcutta has secured the Fifth position among the Universities of India in the prestigious &quot;Indian University Ranking 2019&quot; list, released by the NIRF of the Ministry of Human Resource Development, Government of India.

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It was established on 24 January 1857, and was one of the first institutions in Asia to be established as a multidisciplinary and Western-style university. Its alumni and faculty include several heads of state, heads of government, social reformers, prominent artists, only academy award winner and Dirac medal winner in India, many Fellows of the Royal Society and five Nobel laureates as of 2019 which is highest in South Asia.

University Of Calcutta

Physical Chemistry Chemical Physics

The present study demonstrates the interaction of potential chloride channel blocker drug, namely, 9-methylanthroate (9MA) with dimyristoylphosphatidylcholine (DMPC) lipid bilayer membrane in the solid gel (SG, at 15 °C) and liquid crystalline (LC, at 37 °C) phases of the lipid. Our spectroscopic results reveal a relatively greater degree of partitioning of the drug molecules into the DMPC lipid membrane at 37 °C (LC phase) compared to that at 15 °C (SG phase). Furthermore, the study is extended to explore the interaction of a bile salt (sodium deoxycholate, NaDC) with the DMPC lipid bilayer membrane in the SG as well as LC phase utilizing the environment-sensitive photophysical characteristics of the drug. Our steady-state and time-resolved spectroscopic results are invoked to critically analyze all the possibilities of bile salt-induced modulation of the photophysical behavior of the lipid-bound drug e.g., (i) expulsion of the lipid-bound drug molecules to the bulk aqueous phase upon addition of the bile salt, (ii) redistribution of population of the drug molecules within the lipid membrane and (iii) penetration of water molecules into the lipid bilayer membrane and thereby altering the hydration structure of the membrane. Cumulatively, our results appear to converge on the possibility of bile salt-induced hydration of the interfacial region of the lipid membrane as the actuating mechanism of the lipid-bile salt interaction. It is imperative to state that the present study emphasizes on the interaction of DMPC lipid membrane with the bile salt (NaDC) only in the submicellar concentration regime of NaDC which involves no significant perturbation of the lipid vesicle structure. © 2018

Journal of Luminescence

Interaction of a chloride channel blocker with a lipid bilayer membrane and subsequent effect of addition of submicellar concentrations of bile salt

The present work demonstrates a detailed photophysics of bio-active drug-like acid viz., 2-hydroxynicotinic acid (2-HNA) and its interaction with a model plasma protein Bovine Serum Albumin (BSA). The drug which is in essence a vitamin-B3 derivative, is capable of exhibiting ultrafast lactim-lactam cross-over response and thereby the modulation of the lactam emission within the bio-environment of the protein has been depicted spectroscopically to reveal the drug-protein interaction. Apart from evaluating the binding constant, the probable location of the neutral drug molecule within the protein cavity (hydrophobic subdomain IIIA) has been explored by AutoDock-based blind docking simulation technique. In this microheterogeneous medium, slow solvent reorientation time with respect to the emissive lifetime of the drug explicate the Red Edge Effect (REE). To complement the findings about the binding process, chaotrope-induced protein denaturation has also been inspected. The probe also illustrates a perceptible difference in rotational relaxation time in confined medium than in aqueous medium which strengthen our verdict. Unfolding of the protein in the presence of the drug molecule has been probed by the decrease of the α-helical content, obtained via circular dichroism (CD) spectroscopy, which is also supported by the gradual slaughter of the esterase activity of the protein in the presence of the drug molecule. © 2016 Elsevier B.V.

Journal of Photochemistry and Photobiology B: Biology

Effect of the binding interaction of an emissive niacin derivative on the conformation and activity of a model plasma protein: A spectroscopic and simulation-based approach

Interaction of a potential chloride channel blocker, 9-methyl anthroate (9-MA), has been studied with zwitterionic l-α-phosphatidylcholine (egg-PC) lipid vesicles, which ascertains the utility of the drug as an efficient molecular reporter for probing the microheterogeneous environment of lipid-bilayers. The effect of a non-ionic triblock co-polymer P123 on the stability of these drug-bound lipid-bilayers has also been investigated by means of steady state and time-resolved spectroscopic techniques exploiting the fluorescence properties of the drug. Experimental results reveal that the addition of P123 to the drug-bound lipid results in a preferential complexation of the drug with the Pluronic leaving the lipid vesicles aside, which has been attributed to a substantially stronger binding interaction of the drug with P123 than that with egg-PC. The result is of potential interest from a medical perspective owing to the context of excess drug desorption from bio-membranes. This journal is © the Owner Societies 2015.

Interaction of triblock co-polymer micelles with phospholipid-bilayer: A spectroscopic investigation using a potential chloride channel blocker

Studies on the interaction of naturally occurring flavonoids with different polymorphic forms of nucleic acid are helpful for understanding the molecular aspects of binding mode and providing direction for the use and design of new efficient therapeutic agents. However, much less information is available on the interactions of these compounds with different polymorphic forms of DNA at the molecular level. In this report we investigated the interaction of two widely abundant dietary flavonoids quercetin (Q) and morin (M) with calf thymus (CT) DNA. Spectrophotometric, spectropolarimetric, viscosity measurement, and molecular docking simulation methods are used as tools to delineate the binding mode and probable location of the flavonoids and their effects on the stability and conformation of DNA. It is observed that in the presence of the protonated form of DNA the dual fluorescence of Q and M resulting from the excited-state intramolecular proton transfer (ESIPT) is modified significantly. Structural analysis showed Q and M binds weakly to the B form (groove binding) compared to the protonated form of CT DNA (electrostatic interaction). In both cases, Q binds strongly to both forms of DNA compared to M. (Figure Presented). © 2015 American Chemical Society.

Journal of Physical Chemistry B

Deciphering the Positional Influence of the Hydroxyl Group in the Cinnamoyl Part of 3-Hydroxy Flavonoids for Structural Modification and Their Interaction with the Protonated and B Form of Calf Thymus DNA Using Spectroscopic and Molecular Modeling Studies

In this article, the binding interactions of a promising chloride channel blocker 9-methyl anthroate (9-MA) with a series of bile-salt aggregates of varying hydrophobicity have been thoroughly demonstrated. The altered photophysical properties of the fluorescent probe within the concerned microheterogeneous environments have been exploited spectroscopically to assess the communication between the aggregates and the guest. The contrived hydrophobic environment provided by the aggregates appreciably diminishes the water-assisted non-radiative decay channels and thus extends the fluorescence lifetime and the rotational relaxation time of the probe. NaDC aggregates, being more rigid and hydrophobic, provide a better protection to the bound guest from the external influence which is apparent from a much longer fluorescence lifetime and rotational correlation time for the encapsulated probe in NaDC aggregates compared to those in NaC and NaTC aggregates, as is further validated by fluorescence quenching experiments. Salt induced alterations of the binding behavior of the probe with the bile-salt aggregates have also been evaluated via fluorimetric studies, which conclude larger and tighter aggregate formation resulting in a superior degree of rigidity imposed on the aggregate-bound probe at high ionic strength of the medium. © The Royal Society of Chemistry and Owner Societies 2015.

Photochemical and Photobiological Sciences

Modulated photophysics of an anthracene-based fluorophore within bile-salt aggregates: The effect of the ionic strength of the medium on the aggregation behavior

The present contribution reports a detailed characterization of the binding interaction of a potential anticancer, anti-HIV drug 1-phenylisatin (1-PI) with a model transport protein Bovine Serum Albumin (BSA) using fluorescence spectroscopic techniques. The thermodynamic parameters e.g., ΔH, ΔS and ΔG for the binding phenomenon have been evaluated on the basis of the van't Hoff equation to reveal that the binding process is principally driven by ionic interactions mediated by charge transfer interaction. This line of argument has been substantiated by frontier molecular orbital analysis of 1-PI. However, the drug-induced quenching of the intrinsic tryptophanyl fluorescence of the protein is found not to abide by a linear Stern-Volmer regression (displaying an upward curvature) when an extensive time-resolved fluorescence spectroscopic characterization of the quenching process has been undertaken to unveil the actuating quenching mechanism. Based on the constancy of the fluorescence lifetime of the protein as a function of drug concentration the observed quenching is inferred to proceed through a static mechanism between the quenching partners. Constant wavelength synchronous fluorescence, excitation-emission matrix fluorescence and circular dichroic (CD) spectroscopic techniques have been exploited to unravel the tertiary and secondary conformational changes in the protein (BSA) induced by drug (1-PI)-binding. The probable binding location of the drug molecule within the protein cavity (hydrophilic subdomain I) has been explored by AutoDock-based blind docking simulation and the inference is further substantiated by site-competitive replacement experiments with specific site-markers. Light is also cast on the drug-protein binding kinetics using the stopped-flow fluorescence technique which reveals an association rate constant of ka (± 5%) = 1.471 × 10-3 s-1 for the interaction of 1-PI with BSA. © the Owner Societies 2013.

Unraveling the binding interaction and kinetics of a prospective anti-HIV drug with a model transport protein: Results and challenges

Photophysical properties of an anthracene derivative 9-methyl anthroate (9-MA) have been investigated using absorption and emission spectroscopy, in combination with quantum chemical calculations. Solvatochromic effects on the Stokes shifted emission band clearly demonstrate the highly polar character of the excited state, which is also supported by the enhancement of dipole moment of the molecule upon photoexcitation. The emission band has been found to be dependent on polarity and hydrogen-bonding ability of the solvents. Multiple linear regression analysis method has been utilized to rationalize the effect of hydrogen bonding interaction on the emissive state, which was further confirmed by the analysis of the non-radiative decay constants and urea induced H-bonding disruption study. The experimental results correlate well with theoretical predictions obtained via density functional theory (DFT). © 2013 Elsevier B.V. All rights reserved.

Spectrochimica Acta - Part A: Molecular and Biomolecular Spectroscopy

Solvent modulated photophysics of 9-methyl anthroate: Exploring the effect of polarity and hydrogen bonding on the emissive state

The present work demonstrates a detailed characterization of the interaction of a bio-active drug molecule 3,5-dichlorosalicyclic acid (3,5DCSA) with a model transport protein Bovine Serum Albumin (BSA). The drug molecule is a potential candidate exhibiting Excited-State Intramolecular Proton Transfer (ESIPT) reaction and the modulation of ESIPT photophysics within the bio-environment of the protein has been exploited spectroscopically to monitor the drug-protein binding interaction. Apart from evaluating the binding constant (K (±10%) = 394 M -1) the probable location of the neutral drug molecule within the protein cavity (hydrophobic subdomain IIA) is explored by AutoDock-based blind docking simulation. The rotational relaxation dynamics of the drug within the protein has been interpreted on the lexicon of the two-step and wobbling-in-cone model. Circular dichroism (CD) spectroscopy delineates the effect of drug binding on the protein secondary structure in terms of decrease of α-helical content of BSA with increasing drug concentration. Also the esterase activity of the drugprotein conjugate system is found to be reduced in comparison to the native protein. © 2012 the Owner Societies.

Spectral deciphering of the interaction between an intramolecular hydrogen bonded ESIPT drug, 3,5-dichlorosalicylic acid, and a model transport protein

The present work describes the interaction of a promising cancer cell photosensitizer, harmane (HM), with a model transport protein, Bovine Serum Albumin (BSA). The studied molecule of interest (HM) belongs to the family of naturally occurring fluorescent drug-binding alkaloids, the β-carbolines. A combined use of steady-state and time-resolved fluorescence techniques is applied to follow and characterize the binding interaction. The polarity-dependent prototropic activity of HM is found to be responsible for the commendable sensitivity of the probe to the protein environments and is distinctly reflected on the emission profile. Steady-state fluorescence anisotropy study reveals the impartation of a considerable degree of motional restriction on the drug molecule as a result of binding to the protein. Contrary to the single-exponential nature of fluorescence anisotropy decay of HM in aqueous buffer, they are found to be biexponential in the protein environment. The rotational relaxation dynamics of HM within the protein has been interpreted on the lexicon of the Two-Step and Wobbling-in-Cone model. The probable binding location for the cationic drug is found to be the hydrophilic binding zone of BSA, i.e., domain I (characterized by a net negative charge). The AutoDock-based blind docking simulation has been explored for evaluating an unbiased result of the probable interaction site of HM in the protein. To unfold the effect of binding of the drug on the secondary structural content of the protein, circular dichroism (CD) spectroscopy has been exploited to see that binding of the drug accompanies some decrease in α-helical content of BSA, and the effect gradually saturates toward a higher drug/protein molar ratio. © 2011 American Chemical Society.

Modulation of prototropic activity and rotational relaxation dynamics of a cationic biological photosensitizer within the motionally constrained bio-environment of a protein

In this paper, we demonstrate the interaction between intramolecular charge transfer (ICT) probe-Methyl ester of N,N-dimethylamino naphthyl acrylic acid (MDMANA) with bovine serum albumin (BSA) using absorption and fluorescence emission spectroscopy. The nature of probe protein binding interaction, fluorescence resonance energy transfer from protein to probe and time resolved fluorescence decay measurement predict that the probe molecule binds strongly to the hydrophobic cavity of the protein. Furthermore, the interaction of the anionic surfactant sodium dodecyl sulphate (SDS) with water soluble protein BSA has been investigated using MDMANA as fluorescenece probe. The changes in the spectral characteristics of charge transfer fluorescence probe MDMANA in BSA-SDS environment reflects well the nature of the protein-surfactant binding interaction such as specific binding, non-cooperative binding, cooperative binding and saturation binding. © 2010 Elsevier B.V. All rights reserved.

Study of protein-probe complexation equilibria and protein-surfactant interaction using charge transfer fluorescence probe methyl ester of N,N-dimethylamino naphthyl acrylic acid

Journal	Data powered by TypesetPhysical Chemistry Chemical Physics
Publisher	Data powered by TypesetRoyal Society of Chemistry
ISSN	1463-9076
Open Access	No